Along with the publication of 19 ancient human genomes from Paleolithic to Bronze Age Lake Baikal, Yu et al. published two Y. pestis genomes. Remarkably, the two individuals carrying plague show no Yamnaya-related ancestry, in contrast to all previously identified individuals infected with this LNBA plague branch. Another suprising result is that the closest Y. pestis strain in the phylogeny published so far was found in Estonia (Kunila2).
Yu, H. et al. Paleolithic to Bronze Age Siberians Reveal Connections with First Americans and across Eurasia. Cell [in press] (2020) doi:10.1016/j.cell.2020.04.037
Modern humans have inhabited the Lake Baikal region since the Upper Paleolithic, though the precise history of its peoples over this long time span is still largely unknown. Here, we report genome-wide data from 19 Upper Paleolithic to Early Bronze Age individuals from this Siberian region. An Upper Paleolithic genome shows a direct link with the First Americans by sharing the admixed ancestry that gave rise to all non-Arctic Native Americans. We also demonstrate the formation of Early Neolithic and Bronze Age Baikal populations as the result of prolonged admixture throughout the eighth to sixth millennium BP. Moreover, we detect genetic interactions with western Eurasian steppe populations and reconstruct Yersinia pestis genomes from two Early Bronze Age individuals without western Eurasian ancestry. Overall, our study demonstrates the most deeply divergent connection between Upper Paleolithic Siberians and the First Americans and reveals human and pathogen mobility across Eurasia during the Bronze Age.